This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

divergence

Divergence: Functionality for assessing omics data by divergence with respect to a baseline

Bioconductor version: Release (3.17)

This package provides functionality for performing divergence analysis as presented in Dinalankara et al, "Digitizing omics profiles by divergence from a baseline", PANS 2018. This allows the user to simplify high dimensional omics data into a binary or ternary format which encapsulates how the data is divergent from a specified baseline group with the same univariate or multivariate features.

Author: Wikum Dinalankara <wdd4001 at med.cornell.edu>, Luigi Marchionni <marchion at jhu.edu>, Qian Ke <qke1 at jhu.edu>

Maintainer: Wikum Dinalankara <wdd4001 at med.cornell.edu>, Luigi Marchionni <marchion at jhu.edu>

Citation (from within R, enter citation("divergence")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("divergence")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("divergence")
Performing Divergence Analysis HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews Software, StatisticalMethod
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL-2
Depends R (>= 3.6), SummarizedExperiment
Imports
Linking To
Suggests knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package divergence_1.16.0.tar.gz
Windows Binary divergence_1.16.0.zip
macOS Binary (x86_64) divergence_1.16.0.tgz
macOS Binary (arm64) divergence_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/divergence
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/divergence
Bioc Package Browser https://code.bioconductor.org/browse/divergence/
Package Short Url https://bioconductor.org/packages/divergence/
Package Downloads Report Download Stats