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drawProteins

Package to Draw Protein Schematics from Uniprot API output

Bioconductor version: Release (3.17)

This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.

Author: Paul Brennan [aut, cre]

Maintainer: Paul Brennan <brennanpincardiff at gmail.com>

Citation (from within R, enter citation("drawProteins")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drawProteins")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drawProteins")
Using drawProteins HTML R Script
Using extract_transcripts in drawProteins HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews FunctionalPrediction, Proteomics, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports ggplot2, httr, dplyr, readr, tidyr
Linking To
Suggests covr, testthat, knitr, rmarkdown, BiocStyle
System Requirements
Enhances
URL https://github.com/brennanpincardiff/drawProteins
Bug Reports https://github.com/brennanpincardiff/drawProteins/issues/new
See More
Depends On Me
Imports Me factR
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package drawProteins_1.20.0.tar.gz
Windows Binary drawProteins_1.20.0.zip (64-bit only)
macOS Binary (x86_64) drawProteins_1.20.0.tgz
macOS Binary (arm64) drawProteins_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/drawProteins
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/drawProteins
Bioc Package Browser https://code.bioconductor.org/browse/drawProteins/
Package Short Url https://bioconductor.org/packages/drawProteins/
Package Downloads Report Download Stats