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esetVis

Visualizations of expressionSet Bioconductor object

Bioconductor version: Release (3.17)

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("esetVis")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("esetVis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("esetVis")
esetVis package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization
Version 1.26.1
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL-3
Depends
Imports mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods
Linking To
Suggests ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment, GO.db
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package esetVis_1.26.1.tar.gz
Windows Binary esetVis_1.26.1.zip
macOS Binary (x86_64) esetVis_1.26.1.tgz
macOS Binary (arm64) esetVis_1.26.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/esetVis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/esetVis
Bioc Package Browser https://code.bioconductor.org/browse/esetVis/
Package Short Url https://bioconductor.org/packages/esetVis/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive