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flowAI

Automatic and interactive quality control for flow cytometry data

Bioconductor version: Release (3.17)

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco, Hao Chen

Maintainer: Gianni Monaco <mongianni1 at gmail.com>

Citation (from within R, enter citation("flowAI")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowAI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowAI")
Automatic and GUI methods to do quality control on Flow cytometry Data HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License GPL (>= 2)
Depends R (>= 3.6)
Imports ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown
Linking To
Suggests testthat, shiny, BiocStyle
System Requirements
Enhances
URL
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Depends On Me
Imports Me CytoPipeline
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowAI_1.30.0.tar.gz
Windows Binary flowAI_1.30.0.zip (64-bit only)
macOS Binary (x86_64) flowAI_1.30.0.tgz
macOS Binary (arm64) flowAI_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowAI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowAI
Bioc Package Browser https://code.bioconductor.org/browse/flowAI/
Package Short Url https://bioconductor.org/packages/flowAI/
Package Downloads Report Download Stats