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geneRecommender

A gene recommender algorithm to identify genes coexpressed with a query set of genes

Bioconductor version: Release (3.17)

This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.

Author: Gregory J. Hather <ghather at stat.berkeley.edu>, with contributions from Art B. Owen <art at stat.stanford.edu> and Terence P. Speed <terry at stat.berkeley.edu>

Maintainer: Greg Hather <ghather at stat.berkeley.edu>

Citation (from within R, enter citation("geneRecommender")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneRecommender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneRecommender")
Using the geneRecommender Package PDF R Script
Reference Manual PDF

Details

biocViews Clustering, Microarray, Software
Version 1.72.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License GPL (>= 2)
Depends R (>= 1.8.0), Biobase(>= 1.4.22), methods
Imports Biobase, methods, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneRecommender_1.72.0.tar.gz
Windows Binary geneRecommender_1.72.0.zip
macOS Binary (x86_64) geneRecommender_1.72.0.tgz
macOS Binary (arm64) geneRecommender_1.72.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/geneRecommender
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneRecommender
Bioc Package Browser https://code.bioconductor.org/browse/geneRecommender/
Package Short Url https://bioconductor.org/packages/geneRecommender/
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