infinityFlow

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions

Bioconductor version: Release (3.17)

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Citation (from within R, enter citation("infinityFlow")):

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")

Basic usage of the infinityFlow package	HTML	R Script
Training non default regression models	HTML	R Script
Reference Manual	PDF

biocViews	CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software
Version	1.10.0
In Bioconductor since	BioC 3.12 (R-4.0) (3 years)
License	GPL-3
Depends	R (>= 4.0.0), flowCore
Imports	stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost
Linking To
Suggests	knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
System Requirements
Enhances
URL

Follow Installation instructions to use this package in your R session.

Source Package	infinityFlow_1.10.0.tar.gz
Windows Binary	infinityFlow_1.10.0.zip
macOS Binary (x86_64)	infinityFlow_1.10.0.tgz
macOS Binary (arm64)	infinityFlow_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/infinityFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/infinityFlow
Bioc Package Browser	https://code.bioconductor.org/browse/infinityFlow/
Package Short Url	https://bioconductor.org/packages/infinityFlow/
Package Downloads Report	Download Stats