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ipdDb

IPD IMGT/HLA and IPD KIR database for Homo sapiens

Bioconductor version: Release (3.17)

All alleles from the IPD IMGT/HLA and IPD KIR database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Author: Steffen Klasberg

Maintainer: Steffen Klasberg <klasberg at dkms-lab.de>

Citation (from within R, enter citation("ipdDb")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ipdDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ipdDb")
ipdDb HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationHubSoftware, DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation
Version 1.18.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, AnnotationDbi(>= 1.43.1), AnnotationHub
Imports Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat
Linking To
Suggests knitr, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/DKMS-LSL/ipdDb
Bug Reports https://github.com/DKMS-LSL/ipdDb/issues/new
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ipdDb_1.18.0.tar.gz
Windows Binary ipdDb_1.18.0.zip (64-bit only)
macOS Binary (x86_64) ipdDb_1.18.0.tgz
macOS Binary (arm64) ipdDb_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ipdDb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ipdDb
Bioc Package Browser https://code.bioconductor.org/browse/ipdDb/
Package Short Url https://bioconductor.org/packages/ipdDb/
Package Downloads Report Download Stats