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methylMnM

detect different methylation level (DMR)

Bioconductor version: Release (3.17)

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Author: Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Maintainer: Yan Zhou<zhouy1016 at 163.com>

Citation (from within R, enter citation("methylMnM")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylMnM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylMnM")
methylMnM PDF R Script
Reference Manual PDF

Details

biocViews DNAMethylation, Sequencing, Software
Version 1.38.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL-3
Depends R (>= 2.12.1), edgeR, statmod
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylMnM_1.38.0.tar.gz
Windows Binary methylMnM_1.38.0.zip (64-bit only)
macOS Binary (x86_64) methylMnM_1.38.0.tgz
macOS Binary (arm64) methylMnM_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methylMnM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylMnM
Bioc Package Browser https://code.bioconductor.org/browse/methylMnM/
Package Short Url https://bioconductor.org/packages/methylMnM/
Package Downloads Report Download Stats