mirTarRnaSeq
mirTarRnaSeq
Bioconductor version: Release (3.17)
mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.
Author: Mercedeh Movassagh [aut, cre] 
, Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]
Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>
citation("mirTarRnaSeq")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mirTarRnaSeq")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mirTarRnaSeq")| mirTarRnaSeq | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (2 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1.0), ggplot2 |
| Imports | purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils, viridis |
| Linking To | |
| Suggests | BiocStyle, knitr, rmarkdown, R.cache, SPONGE |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mirTarRnaSeq_1.8.0.tar.gz |
| Windows Binary | mirTarRnaSeq_1.8.0.zip (64-bit only) |
| macOS Binary (x86_64) | mirTarRnaSeq_1.8.0.tgz |
| macOS Binary (arm64) | mirTarRnaSeq_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mirTarRnaSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mirTarRnaSeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/mirTarRnaSeq/ |
| Package Short Url | https://bioconductor.org/packages/mirTarRnaSeq/ |
| Package Downloads Report | Download Stats |