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mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Release (3.17)

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("mosaics")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mosaics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mosaics")
MOSAiCS PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version 2.38.0
In Bioconductor since BioC 2.8 (R-2.13) (12.5 years)
License GPL (>= 2)
Depends R (>= 3.0.0), methods, graphics, Rcpp
Imports MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors
Linking To Rcpp
Suggests mosaicsExample
System Requirements Perl
Enhances parallel
URL http://groups.google.com/group/mosaics_user_group
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mosaics_2.38.0.tar.gz
Windows Binary mosaics_2.38.0.zip (64-bit only)
macOS Binary (x86_64) mosaics_2.38.0.tgz
macOS Binary (arm64) mosaics_2.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mosaics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mosaics
Bioc Package Browser https://code.bioconductor.org/browse/mosaics/
Package Short Url https://bioconductor.org/packages/mosaics/
Package Downloads Report Download Stats