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multiMiR

Integration of multiple microRNA-target databases with their disease and drug associations

Bioconductor version: Release (3.17)

A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

Author: Yuanbin Ru [aut], Matt Mulvahill [cre, aut], Spencer Mahaffey [aut], Katerina Kechris [aut, cph, ths]

Maintainer: Matt Mulvahill <matt.mulvahill at gmail.com>

Citation (from within R, enter citation("multiMiR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("multiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiMiR")
The multiMiR user's guide HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 1.2), methods, BiocGenerics, AnnotationDbi, dplyr
Linking To
Suggests BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2)
System Requirements
Enhances
URL https://github.com/KechrisLab/multiMiR
Bug Reports https://github.com/KechrisLab/multiMiR/issues
See More
Depends On Me
Imports Me
Suggests Me EpiMix
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package multiMiR_1.22.0.tar.gz
Windows Binary multiMiR_1.22.0.zip
macOS Binary (x86_64) multiMiR_1.22.0.tgz
macOS Binary (arm64) multiMiR_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/multiMiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiMiR
Bioc Package Browser https://code.bioconductor.org/browse/multiMiR/
Package Short Url https://bioconductor.org/packages/multiMiR/
Package Downloads Report Download Stats