multiOmicsViz
Plot the effect of one omics data on other omics data along the chromosome
Bioconductor version: Release (3.17)
Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.
Author: Jing Wang <jingwang.uestc at gmail.com>
Maintainer: Jing Wang <jingwang.uestc at gmail.com>
citation("multiOmicsViz")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("multiOmicsViz")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiOmicsViz")| multiOmicsViz | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, SystemsBiology, Visualization |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (6.5 years) |
| License | LGPL |
| Depends | R (>= 3.3.2) |
| Imports | methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats |
| Linking To | |
| Suggests | BiocGenerics |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | multiOmicsViz_1.24.0.tar.gz |
| Windows Binary | multiOmicsViz_1.24.0.zip |
| macOS Binary (x86_64) | multiOmicsViz_1.24.0.tgz |
| macOS Binary (arm64) | multiOmicsViz_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiOmicsViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiOmicsViz |
| Bioc Package Browser | https://code.bioconductor.org/browse/multiOmicsViz/ |
| Package Short Url | https://bioconductor.org/packages/multiOmicsViz/ |
| Package Downloads Report | Download Stats |