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ncGTW

Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection

Bioconductor version: Release (3.17)

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

Author: Chiung-Ting Wu <ctwu at vt.edu>

Maintainer: Chiung-Ting Wu <ctwu at vt.edu>

Citation (from within R, enter citation("ncGTW")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncGTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncGTW")
ncGTW User Manual HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, MassSpectrometry, Metabolomics, Software
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License GPL-2
Depends methods, BiocParallel, xcms
Imports Rcpp, grDevices, graphics, stats
Linking To Rcpp
Suggests BiocStyle, knitr, testthat, rmarkdown
System Requirements
Enhances
URL
Bug Reports https://github.com/ChiungTingWu/ncGTW/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncGTW_1.14.0.tar.gz
Windows Binary ncGTW_1.14.0.zip
macOS Binary (x86_64) ncGTW_1.14.0.tgz
macOS Binary (arm64) ncGTW_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncGTW
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncGTW
Bioc Package Browser https://code.bioconductor.org/browse/ncGTW/
Package Short Url https://bioconductor.org/packages/ncGTW/
Package Downloads Report Download Stats