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ncRNAtools

An R toolkit for non-coding RNA

Bioconductor version: Release (3.17)

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Author: Lara Selles Vidal [cre, aut] , Rafael Ayala [aut] , Guy-Bart Stan [aut] , Rodrigo Ledesma-Amaro [aut]

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>

Citation (from within R, enter citation("ncRNAtools")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncRNAtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncRNAtools")
rfaRm HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends
Imports httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors
Linking To
Suggests knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
System Requirements
Enhances
URL
Bug Reports https://github.com/LaraSellesVidal/ncRNAtools/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncRNAtools_1.10.0.tar.gz
Windows Binary ncRNAtools_1.10.0.zip (64-bit only)
macOS Binary (x86_64) ncRNAtools_1.10.0.tgz
macOS Binary (arm64) ncRNAtools_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncRNAtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncRNAtools
Bioc Package Browser https://code.bioconductor.org/browse/ncRNAtools/
Package Short Url https://bioconductor.org/packages/ncRNAtools/
Package Downloads Report Download Stats