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ndexr

NDEx R client library

Bioconductor version: Release (3.17)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer [cre, aut] , Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")
NDExR Vignette HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Network, Pathways, Software
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License BSD_3_clause + file LICENSE
Depends RCX
Imports httr, jsonlite, plyr, tidyr
Linking To
Suggests BiocStyle, testthat, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/frankkramer-lab/ndexr
Bug Reports https://github.com/frankkramer-lab/ndexr/issues
See More
Depends On Me
Imports Me
Suggests Me netgsa
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.22.0.tar.gz
Windows Binary ndexr_1.22.0.zip (64-bit only)
macOS Binary (x86_64) ndexr_1.22.0.tgz
macOS Binary (arm64) ndexr_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ndexr
Bioc Package Browser https://code.bioconductor.org/browse/ndexr/
Package Short Url https://bioconductor.org/packages/ndexr/
Package Downloads Report Download Stats