plethy

R framework for exploration and analysis of respirometry data

Bioconductor version: Release (3.17)

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Citation (from within R, enter citation("plethy")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plethy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version	1.37.0
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL-3
Depends	R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors
Imports	Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase
Linking To
Suggests	RUnit, BiocStyle
System Requirements
Enhances
URL

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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)	plethy_1.37.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plethy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plethy
Bioc Package Browser	https://code.bioconductor.org/browse/plethy/
Package Short Url	https://bioconductor.org/packages/plethy/
Package Downloads Report	Download Stats