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plier

Implements the Affymetrix PLIER algorithm

Bioconductor version: Release (3.17)

The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.

Author: Affymetrix Inc., Crispin J Miller, PICR

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

Citation (from within R, enter citation("plier")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
README Text

Details

biocViews Software
Version 1.70.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License GPL (>= 2)
Depends R (>= 2.0), methods
Imports affy, Biobase, methods
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plier_1.70.0.tar.gz
Windows Binary plier_1.70.0.zip
macOS Binary (x86_64) plier_1.70.0.tgz
macOS Binary (arm64) plier_1.70.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/plier
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plier
Bioc Package Browser https://code.bioconductor.org/browse/plier/
Package Short Url https://bioconductor.org/packages/plier/
Package Downloads Report Download Stats