pogos

PharmacOGenomics Ontology Support

Bioconductor version: Release (3.17)

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pogos")):

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pogos")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pogos")

pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology	HTML	R Script
Reference Manual	PDF

biocViews	ImmunoOncology, Pharmacogenomics, PooledScreens, Software
Version	1.20.0
In Bioconductor since	BioC 3.7 (R-3.5) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports	methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
Linking To
Suggests	knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
System Requirements
Enhances
URL

Follow Installation instructions to use this package in your R session.

Source Package	pogos_1.20.0.tar.gz
Windows Binary	pogos_1.20.0.zip
macOS Binary (x86_64)	pogos_1.20.0.tgz
macOS Binary (arm64)	pogos_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pogos
Bioc Package Browser	https://code.bioconductor.org/browse/pogos/
Package Short Url	https://bioconductor.org/packages/pogos/
Package Downloads Report	Download Stats