This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

rhdf5client

Access HDF5 content from HDF Scalable Data Service

Bioconductor version: Release (3.17)

This package provides functionality for reading data from HDF Scalable Data Service from within R. The HSDSArray function bridges from HSDS to the user via the DelayedArray interface. Bioconductor manages an open HSDS instance graciously provided by John Readey of the HDF Group.

Author: Samuela Pollack [aut], Shweta Gopaulakrishnan [aut], BJ Stubbs [aut], Alexey Sergushichev [aut], Vincent Carey [cre, aut]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("rhdf5client")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5client")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5client")
HSDSArray DelayedArray backend HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Software
Version 1.22.2
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License Artistic-2.0
Depends R (>= 3.6), methods, DelayedArray
Imports httr, rjson, utils, data.table
Linking To
Suggests knitr, testthat, BiocStyle, DT, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me restfulSE
Suggests Me BiocOncoTK, HumanTranscriptomeCompendium, restfulSEData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rhdf5client_1.22.2.tar.gz
Windows Binary rhdf5client_1.22.2.zip (64-bit only)
macOS Binary (x86_64) rhdf5client_1.22.2.tgz
macOS Binary (arm64) rhdf5client_1.22.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/rhdf5client
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rhdf5client
Bioc Package Browser https://code.bioconductor.org/browse/rhdf5client/
Package Short Url https://bioconductor.org/packages/rhdf5client/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive