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rnaEditr

Statistical analysis of RNA editing sites and hyper-editing regions

Bioconductor version: Release (3.17)

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Author: Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]

Maintainer: Lanyu Zhang <jennyzly2016 at gmail.com>

Citation (from within R, enter citation("rnaEditr")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaEditr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaEditr")
Introduction to rnaEditr HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DimensionReduction, Epigenetics, FeatureExtraction, GeneTarget, RNASeq, Regression, Software, Survival
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.0)
Imports GenomicRanges, IRanges, BiocGenerics, GenomeInfoDb, bumphunter, S4Vectors, stats, survival, logistf, plyr, corrplot
Linking To
Suggests knitr, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/TransBioInfoLab/rnaEditr
Bug Reports https://github.com/TransBioInfoLab/rnaEditr/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rnaEditr_1.10.0.tar.gz
Windows Binary rnaEditr_1.10.0.zip (64-bit only)
macOS Binary (x86_64) rnaEditr_1.10.0.tgz
macOS Binary (arm64) rnaEditr_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rnaEditr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rnaEditr
Bioc Package Browser https://code.bioconductor.org/browse/rnaEditr/
Package Short Url https://bioconductor.org/packages/rnaEditr/
Package Downloads Report Download Stats