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savR

Parse and analyze Illumina SAV files

Bioconductor version: Release (3.17)

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Citation (from within R, enter citation("savR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("savR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")
Using savR PDF R Script
Reference Manual PDF

Details

biocViews Sequencing, Software
Version 1.37.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License AGPL-3
Depends ggplot2
Imports methods, reshape2, scales, gridExtra, XML
Linking To
Suggests Cairo, testthat
System Requirements
Enhances
URL https://github.com/bcalder/savR
Bug Reports https://github.com/bcalder/savR/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package savR_1.37.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/savR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/savR
Bioc Package Browser https://code.bioconductor.org/browse/savR/
Package Short Url https://bioconductor.org/packages/savR/
Package Downloads Report Download Stats