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struct

Statistics in R Using Class-based Templates

Bioconductor version: Release (3.17)

Defines and includes a set of class-based templates for developing and implementing data processing and analysis workflows, with a strong emphasis on statistics and machine learning. The templates can be used and where needed extended to 'wrap' tools and methods from other packages into a common standardised structure to allow for effective and fast integration. Model objects can be combined into sequences, and sequences nested in iterators using overloaded operators to simplify and improve readability of the code. Ontology lookup has been integrated and implemented to provide standardised definitions for methods, inputs and outputs wrapped using the class-based templates.

Author: Gavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut]

Maintainer: Gavin Rhys Lloyd <g.r.lloyd at bham.ac.uk>

Citation (from within R, enter citation("struct")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("struct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("struct")
Introduction to STRUCT - STatistics in R using Class-based Templates HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, WorkflowStep
Version 1.12.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0)
Imports methods, ontologyIndex, datasets, graphics, stats, utils, knitr, SummarizedExperiment, S4Vectors, rols
Linking To
Suggests testthat, rstudioapi, rmarkdown, covr, BiocStyle, openxlsx, ggplot2, magick
System Requirements
Enhances
URL
See More
Depends On Me structToolbox
Imports Me metabolomicsWorkbenchR
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package struct_1.12.0.tar.gz
Windows Binary struct_1.12.0.zip
macOS Binary (x86_64) struct_1.12.0.tgz
macOS Binary (arm64) struct_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/struct
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/struct
Bioc Package Browser https://code.bioconductor.org/browse/struct/
Package Short Url https://bioconductor.org/packages/struct/
Package Downloads Report Download Stats