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switchBox

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

Bioconductor version: Release (3.17)

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

Author: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Citation (from within R, enter citation("switchBox")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("switchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchBox")
Working with the switchBox package PDF R Script
Reference Manual PDF

Details

biocViews Classification, Software, StatisticalMethod
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL-2
Depends R (>= 2.13.1), pROC, gplots
Imports
Linking To
Suggests
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Depends On Me
Imports Me PDATK
Suggests Me multiclassPairs
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchBox_1.36.0.tar.gz
Windows Binary switchBox_1.36.0.zip
macOS Binary (x86_64) switchBox_1.36.0.tgz
macOS Binary (arm64) switchBox_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchBox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchBox
Bioc Package Browser https://code.bioconductor.org/browse/switchBox/
Package Short Url https://bioconductor.org/packages/switchBox/
Package Downloads Report Download Stats