This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

tidySummarizedExperiment

Brings SummarizedExperiment to the Tidyverse

Bioconductor version: Release (3.17)

tidySummarizedExperiment is an adapter that abstracts the 'SummarizedExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidySummarizedExperiment")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tidySummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidySummarizedExperiment")
Overview of the tidySummarizedExperiment package HTML R Script
Reference Manual PDF

Details

biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.1.0), SummarizedExperiment
Imports tibble (>= 3.0.4), dplyr, magrittr, tidyr, ggplot2, rlang, purrr, lifecycle, methods, plotly, utils, S4Vectors, tidyselect, ellipsis, vctrs, pillar, stringr, cli, fansi
Linking To
Suggests BiocStyle, testthat, knitr, markdown
System Requirements
Enhances
URL https://github.com/stemangiola/tidySummarizedExperiment
Bug Reports https://github.com/stemangiola/tidySummarizedExperiment/issues
See More
Depends On Me
Imports Me
Suggests Me nullranges, tidybulk
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidySummarizedExperiment_1.10.0.tar.gz
Windows Binary tidySummarizedExperiment_1.10.0.zip
macOS Binary (x86_64) tidySummarizedExperiment_1.10.0.tgz
macOS Binary (arm64) tidySummarizedExperiment_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidySummarizedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidySummarizedExperiment
Bioc Package Browser https://code.bioconductor.org/browse/tidySummarizedExperiment/
Package Short Url https://bioconductor.org/packages/tidySummarizedExperiment/
Package Downloads Report Download Stats