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xmapbridge

Export plotting files to the xmapBridge for visualisation in X:Map

Bioconductor version: Release (3.17)

xmapBridge can plot graphs in the X:Map genome browser. This package exports plotting files in a suitable format.

Author: Tim Yates <Tim.Yates at cruk.manchester.ac.uk> and Crispin J Miller <Crispin.Miller at cruk.manchester.ac.uk>

Maintainer: Chris Wirth <Christopher.Wirth at cruk.manchester.ac.uk>

Citation (from within R, enter citation("xmapbridge")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("xmapbridge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("xmapbridge")
xmapbridge primer PDF R Script
Reference Manual PDF

Details

biocViews Annotation, ReportWriting, Software, Visualization
Version 1.58.0
In Bioconductor since BioC 2.3 (R-2.8) (15 years)
License LGPL-3
Depends R (>= 2.0), methods
Imports
Linking To
Suggests RUnit, RColorBrewer
System Requirements
Enhances
URL http://xmap.picr.man.ac.uk http://www.bioconductor.org
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package xmapbridge_1.58.0.tar.gz
Windows Binary xmapbridge_1.58.0.zip
macOS Binary (x86_64) xmapbridge_1.58.0.tgz
macOS Binary (arm64) xmapbridge_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/xmapbridge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/xmapbridge
Bioc Package Browser https://code.bioconductor.org/browse/xmapbridge/
Package Short Url https://bioconductor.org/packages/xmapbridge/
Package Downloads Report Download Stats