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BSgenome.Mmusculus.UCSC.mm10

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)

Bioconductor version: Release (3.17)

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm10")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Mus_musculus
Version 1.4.3
License Artistic-2.0
Depends R (>= 3.5.0), BSgenome(>= 1.60.0)
Imports BSgenome
Linking To
Suggests
System Requirements
Enhances
URL
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Depends On Me BSgenome.Mmusculus.UCSC.mm10.masked
Imports Me ATACCoGAPS, BSgenome.Mmusculus.UCSC.mm10.masked, GeneStructureTools, musicatk, trena
Suggests Me AneuFinder, BSgenome, circRNAprofiler, cliProfiler, crisprDesign, CRISPRseek, enhancerHomologSearch, EpiCompare, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, multicrispr, NADfinder, periodicDNA, scanMiRApp, scmeth, SCOPE, SingleMoleculeFootprinting
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Mmusculus.UCSC.mm10_1.4.3.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/
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