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FDb.FANTOM4.promoters.hg19

Annotation package for FANTOM4 promoters identified from THP-1 cells

Bioconductor version: Release (3.17)

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified

Author: Tim Triche, Jr.

Maintainer: Tim Triche, Jr. <tim.triche at gmail.com>

Citation (from within R, enter citation("FDb.FANTOM4.promoters.hg19")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FDb.FANTOM4.promoters.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Homo_sapiens
Version 1.0.0
License Artistic-2.0
Depends GenomicFeatures(>= 1.7.22), Biostrings
Imports GenomicFeatures, AnnotationDbi
Linking To
Suggests BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19/
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