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SNPlocs.Hsapiens.dbSNP155.GRCh37

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh37/hg19 assembly

Bioconductor version: Release (3.17)

The 929,496,192 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.UCSC.hg19.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP155.GRCh37")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh37")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.24
License Artistic-2.0
Depends R (>= 4.2.0), BSgenome(>= 1.67.2)
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Linking To
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg19
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me motifbreakR, MungeSumstats
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPlocs.Hsapiens.dbSNP155.GRCh37_0.99.24.tar.gz
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Package Short Url https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh37/
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