SNPlocs.Hsapiens.dbSNP155.GRCh38

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly

Bioconductor version: Release (3.17)

The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP155.GRCh38")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version	0.99.24
License	Artistic-2.0
Depends	R (>= 4.2.0), BSgenome(>= 1.67.2)
Imports	methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Linking To
Suggests	Biostrings, BSgenome.Hsapiens.UCSC.hg38
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me	MungeSumstats
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.24.tar.gz
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macOS Binary (x86_64)
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Package Short Url	https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh38/
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