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chromhmmData

Chromosome Size, Coordinates and Anchor Files

Bioconductor version: Release (3.17)

Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("chromhmmData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromhmmData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromhmmData")
chromhmmData HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, Homo_sapiens, Mus_musculus
Version 0.99.2
License GPL-3
Depends R (>= 4.1)
Imports
Linking To
Suggests rmarkdown, knitr
System Requirements
Enhances
URL
Bug Reports https://github.com/MahShaaban/chromhmmData/issues
See More
Depends On Me
Imports Me segmenter
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chromhmmData_0.99.2.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/chromhmmData/
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