CopyhelpeR

Helper files for CopywriteR

Bioconductor version: Release (3.17)

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>

Citation (from within R, enter citation("CopyhelpeR")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CopyhelpeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")

CopyhelpeR	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	ExperimentData, GenomicSequence, Homo_sapiens
Version	1.32.0
License	GPL-2
Depends	R (>= 3.5.0)
Imports
Linking To
Suggests	BiocStyle
System Requirements
Enhances
URL

Depends On Me
Imports Me	CopywriteR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CopyhelpeR_1.32.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CopyhelpeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CopyhelpeR
Package Short Url	https://bioconductor.org/packages/CopyhelpeR/
Package Downloads Report	Download Stats