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EGSEAdata

Gene set collections for the EGSEA package

Bioconductor version: Release (3.17)

This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. It includes Human and Mouse versions of the MSidDB (Subramanian, et al. (2005) PNAS, 102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS Open Bio, 2:76-82) collections.

Author: Monther Alhamdoosh, Yifang Hu and Gordon K. Smyth

Maintainer: Monther Alhamdoosh <m.hamdoosh at gmail.com>

Citation (from within R, enter citation("EGSEAdata")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EGSEAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, Rattus_norvegicus_Data
Version 1.28.0
License file LICENSE
Depends R (>= 3.4)
Imports
Linking To
Suggests EGSEA
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me EGSEA
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EGSEAdata_1.28.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/EGSEAdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EGSEAdata
Package Short Url https://bioconductor.org/packages/EGSEAdata/
Package Downloads Report Download Stats