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GSE62944

GEO accession data GSE62944 as a SummarizedExperiment

Bioconductor version: Release (3.17)

TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub.

Author: Sonali Arora

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GSE62944")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSE62944")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSE62944")
Raw TCGA data using Bioconductor's ExperimentHub HTML R Script
Reference Manual PDF

Details

biocViews DNASeqData, ExperimentData, Genome, RNASeqData
Version 1.28.1
License Artistic-2.0
Depends Biobase, GEOquery
Imports
Linking To
Suggests ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, DESeq2
System Requirements
Enhances
URL http://bioconductor.org/packages/release/bioc/html/GSE62944.html
See More
Depends On Me
Imports Me
Suggests Me GSEABenchmarkeR
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSE62944_1.28.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GSE62944
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSE62944
Package Short Url https://bioconductor.org/packages/GSE62944/
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