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GenomicDistributionsData

Reference data for GenomicDistributions package

Bioconductor version: Release (3.17)

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

Author: Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb]

Maintainer: Kristyna Kupkova <kristynakupkova at gmail.com>

Citation (from within R, enter citation("GenomicDistributionsData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicDistributionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDistributionsData")
1. Getting started with GenomicDistributionsData HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, Genome
Version 1.8.0
License BSD_2_clause + file LICENSE
Depends R (>= 4.1)
Imports ExperimentHub(>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb
Linking To
Suggests knitr, BiocStyle, rmarkdown
System Requirements
Enhances
URL
Bug Reports http://github.com/databio/GenomicDistributionsData
See More
Depends On Me
Imports Me
Suggests Me GenomicDistributions
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicDistributionsData_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GenomicDistributionsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicDistributionsData
Package Short Url https://bioconductor.org/packages/GenomicDistributionsData/
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