This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

HiCDataLymphoblast

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Bioconductor version: Release (3.17)

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <b.mifsud at qmul.ac.uk>

Citation (from within R, enter citation("HiCDataLymphoblast")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HiCDataLymphoblast")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")
package_vignettes.pdf PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.36.0
License GPL-3
Depends
Imports
Linking To
Suggests ShortRead
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me GOTHiC
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataLymphoblast_1.36.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataLymphoblast
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataLymphoblast
Package Short Url https://bioconductor.org/packages/HiCDataLymphoblast/
Package Downloads Report Download Stats