MouseThymusAgeing

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Bioconductor version: Release (3.17)

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at abdn.ac.uk>

Citation (from within R, enter citation("MouseThymusAgeing")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")

Available datasets	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, SingleCellData
Version	1.8.0
License	GPL-3
Depends	SingleCellExperiment, SummarizedExperiment
Imports	ExperimentHub, methods, BiocGenerics, S4Vectors
Linking To
Suggests	knitr, scuttle, rmarkdown, BiocStyle
System Requirements
Enhances
URL
Bug Reports	https://github.com/MarioniLab/MouseThymusAgeing/issues

Depends On Me
Imports Me
Suggests Me	miloR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseThymusAgeing_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MouseThymusAgeing
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseThymusAgeing
Package Short Url	https://bioconductor.org/packages/MouseThymusAgeing/
Package Downloads Report	Download Stats