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RNAseqData.HNRNPC.bam.chr14

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Release (3.17)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAseqData.HNRNPC.bam.chr14")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version 0.38.0
License LGPL
Depends
Imports
Linking To
Suggests GenomicAlignments, BiocManager
System Requirements
Enhances
URL http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
See More
Depends On Me sequencing
Imports Me
Suggests Me BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAseqData.HNRNPC.bam.chr14_0.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url https://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
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