This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

RTCGA.rnaseq

Rna-seq datasets from The Cancer Genome Atlas Project

Bioconductor version: Release (3.17)

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.rnaseq")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.rnaseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.rnaseq")
Using RTCGA to download RNAseq data as included in RTCGA.rnaseq HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation Data, ExperimentData
Version 20151101.30.0
License GPL-2
Depends R (>= 3.2.0), RTCGA
Imports
Linking To
Suggests knitr, rmarkdown
System Requirements
Enhances
URL
Bug Reports https://github.com/RTCGA/RTCGA/issues
See More
Depends On Me
Imports Me
Suggests Me RTCGA, TDbasedUFEadv
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.rnaseq_20151101.30.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.rnaseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.rnaseq
Package Short Url https://bioconductor.org/packages/RTCGA.rnaseq/
Package Downloads Report Download Stats