This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

RcisTarget.hg19.motifDBs.cisbpOnly.500bp

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs

Bioconductor version: Release (3.17)

RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.

Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.

Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>

Citation (from within R, enter citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.20.0
License GPL-3
Depends R (>= 3.3)
Imports data.table
Linking To
Suggests
System Requirements
Enhances
URL http://scenic.aertslab.org
See More
Depends On Me
Imports Me
Suggests Me RcisTarget
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.20.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Package Short Url https://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/
Package Downloads Report Download Stats