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STexampleData

Collection of spatially-resolved transcriptomics datasets in SpatialExperiment Bioconductor format

Bioconductor version: Release (3.17)

Collection of spatially-resolved transcriptomics (SRT) datasets in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different SRT platforms and have been sourced from various publicly available sources. Several datasets include images and/or ground truth annotation labels.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Citation (from within R, enter citation("STexampleData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")
STexampleData package overview HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData
Version 1.8.0
License MIT + file LICENSE
Depends ExperimentHub, SpatialExperiment
Imports utils
Linking To
Suggests BiocStyle, knitr, rmarkdown, BumpyMatrix
System Requirements
Enhances
URL https://github.com/lmweber/STexampleData
Bug Reports https://github.com/lmweber/STexampleData/issues
See More
Depends On Me
Imports Me
Suggests Me escheR, ggspavis, nnSVG
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package STexampleData_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/STexampleData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STexampleData
Package Short Url https://bioconductor.org/packages/STexampleData/
Package Downloads Report Download Stats