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SimBenchData

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Bioconductor version: Release (3.17)

The SimBenchData package contains a total of 35 single-cell RNA-seq datasets covering a wide range of data characteristics, including major sequencing protocols, multiple tissue types, and both human and mouse sources.

Author: Yue Cao [aut, cre], Pengyi Yang [aut], Jean Yee Hwa Yang [aut]

Maintainer: Yue Cao <ycao6928 at uni.sydney.edu.au>

Citation (from within R, enter citation("SimBenchData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SimBenchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SimBenchData")
SimBenchData: a collection of single-cell RNA-seq data covering a wide range of data characteristics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, RNASeqData, SequencingData, SingleCellData, Tissue
Version 1.8.0
License GPL-3
Depends ExperimentHub
Imports S4Vectors, utils
Linking To
Suggests BiocStyle, knitr, rmarkdown, Seurat
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SimBenchData_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SimBenchData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SimBenchData
Package Short Url https://bioconductor.org/packages/SimBenchData/
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