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bcellViper

Human B-cell transcriptional interactome and normal human B-cell expression data

Bioconductor version: Release (3.17)

This package provides a human B-cell context-specific transcriptional regulatory network and a human normal B-cells dataset for the examples in package viper.

Author: Mariano Javier Alvarez

Maintainer: Mariano Javier Alvarez <malvarez at c2b2.columbia.edu>

Citation (from within R, enter citation("bcellViper")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bcellViper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bcellViper")
Using bcellViper PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, Genome, Homo_sapiens_Data
Version 1.36.0
License GPL (>=2)
Depends R (>= 2.14.0), Biobase, methods
Imports
Linking To
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Depends On Me
Imports Me dorothea
Suggests Me GenomicSuperSignature, iterClust, pageRank, viper
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bcellViper_1.36.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/bcellViper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bcellViper
Package Short Url https://bioconductor.org/packages/bcellViper/
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