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bladderbatch

Bladder gene expression data illustrating batch effects

Bioconductor version: Release (3.17)

This package contains microarray gene expression data on 57 bladder samples from 5 batches. The data are used as an illustrative example for the sva package.

Author: Jeffrey T. Leek <jleek at jhsph.edu>

Maintainer: Jeffrey T. Leek <jleek at jhsph.edu>

Citation (from within R, enter citation("bladderbatch")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bladderbatch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bladderbatch")
bladderbatchTutorial PDF R Script
Reference Manual PDF

Details

biocViews CancerData, ExperimentData, MicroarrayData
Version 1.38.0
License Artistic-2.0
Depends Biobase
Imports
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me RUVcorr
Suggests Me Harman, sva
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bladderbatch_1.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/bladderbatch
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bladderbatch
Package Short Url https://bioconductor.org/packages/bladderbatch/
Package Downloads Report Download Stats