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clustifyrdatahub

External data sets for clustifyr in ExperimentHub

Bioconductor version: Release (3.17)

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut] , Kent Riemondy [aut, cre] , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] , Jay Hesselberth [ctb] , Sidhant Puntambekar [ctb]

Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>

Citation (from within R, enter citation("clustifyrdatahub")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")
clustifyrdatahub HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version 1.10.0
License MIT + file LICENSE
Depends R (>= 4.0), ExperimentHub
Imports utils
Linking To
Suggests clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle
System Requirements
Enhances
URL https://rnabioco.github.io/clustifyrdatahub/
Bug Reports https://github.com/rnabioco/clustifyrdatahub/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clustifyrdatahub_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/clustifyrdatahub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clustifyrdatahub
Package Short Url https://bioconductor.org/packages/clustifyrdatahub/
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