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curatedAdipoChIP

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: Release (3.17)

A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoChIP")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedAdipoChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoChIP")
Using curatedAdipoChIP HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData
Version 1.16.0
License GPL-3
Depends R (>= 3.6), SummarizedExperiment, ExperimentHub
Imports
Linking To
Suggests knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2
System Requirements
Enhances
URL https://github.com/MahShaaban/curatedAdipoChIP
Bug Reports https://github.com/MahShaaban/curatedAdipoChIP/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedAdipoChIP_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/curatedAdipoChIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedAdipoChIP
Package Short Url https://bioconductor.org/packages/curatedAdipoChIP/
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