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etec16s

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Bioconductor version: Release (3.17)

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

Author: Joseph N. Paulson

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>

Citation (from within R, enter citation("etec16s")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("etec16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("etec16s")
etec16s PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, MicrobiomeData, SequencingData
Version 1.28.0
License Artistic-2.0
Depends R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0)
Imports
Linking To
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Depends On Me
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Suggests Me metavizr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package etec16s_1.28.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/etec16s
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/etec16s
Package Short Url https://bioconductor.org/packages/etec16s/
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