nullrangesData
ExperimentHub datasets for the nullranges package
Bioconductor version: Release (3.17)
Provides datasets for the nullranges package vignette, in particular example datasets for DNase hypersensitivity sites (DHS), CTCF binding sites, and CTCF genomic interactions. These are used to demonstrate generation of null hypothesis feature sets, either through block bootstrapping or matching, in the nullranges vignette. For more details, see the data object man pages, and the R scripts for object construction provided within the package.
Author: Michael Love [aut, cre] 
, Wancen Mu [aut] , Eric Davis [aut] , Mikhail Dozmorov [aut]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("nullrangesData")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nullrangesData")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nullrangesData")| nullrangesData package | HTML | R Script |
| Reference Manual |
Details
| biocViews | ChIPSeqData, ENCODE, ExperimentData, ExperimentHub, Homo_sapiens_Data, SequencingData |
| Version | 1.6.0 |
| License | GPL-3 |
| Depends | R (>= 4.1.0), ExperimentHub, GenomicRanges, InteractionSet |
| Imports | utils |
| Linking To | |
| Suggests | knitr, rmarkdown |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | iSEEhub, nullranges |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | nullrangesData_1.6.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/nullrangesData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nullrangesData |
| Package Short Url | https://bioconductor.org/packages/nullrangesData/ |
| Package Downloads Report | Download Stats |