spatialDmelxsim

Spatial allelic expression counts for fly cross embryo

Bioconductor version: Release (3.17)

Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.

Author: Michael Love [aut, cre]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("spatialDmelxsim")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spatialDmelxsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spatialDmelxsim")

spatialDmelxsim	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData
Version	1.6.1
License	GPL-3
Depends	R (>= 4.1), ExperimentHub, SummarizedExperiment
Imports	utils
Linking To
Suggests	knitr, rmarkdown, BiocStyle
System Requirements
Enhances
URL	https://github.com/mikelove/spatialDmelxsim
Bug Reports	https://github.com/mikelove/spatialDmelxsim/issues

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	spatialDmelxsim_1.6.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/spatialDmelxsim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spatialDmelxsim
Package Short Url	https://bioconductor.org/packages/spatialDmelxsim/
Package Downloads Report	Download Stats