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AIMS

This is the development version of AIMS; for the stable release version, see AIMS.

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Bioconductor version: Development (3.18)

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Author: Eric R. Paquet, Michael T. Hallett

Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>

Citation (from within R, enter citation("AIMS")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AIMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AIMS")
AIMS An Introduction (HowTo) PDF R Script
Reference Manual PDF
README Text

Details

biocViews Classification, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software
Version 1.33.0
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License Artistic-2.0
Depends R (>= 2.10), e1071, Biobase
Imports
Linking To
Suggests breastCancerVDX, hgu133a.db, RUnit, BiocGenerics
System Requirements
Enhances
URL http://www.bci.mcgill.ca/AIMS
See More
Depends On Me genefu
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AIMS_1.33.0.tar.gz
Windows Binary AIMS_1.33.0.zip
macOS Binary (x86_64) AIMS_1.33.0.tgz
macOS Binary (arm64) AIMS_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AIMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AIMS
Bioc Package Browser https://code.bioconductor.org/browse/AIMS/
Package Short Url https://bioconductor.org/packages/AIMS/
Package Downloads Report Download Stats