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AnnotationFilter

This is the development version of AnnotationFilter; for the stable release version, see AnnotationFilter.

Facilities for Filtering Bioconductor Annotation Resources

Bioconductor version: Development (3.18)

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Author: Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationFilter")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnnotationFilter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationFilter")
Facilities for Filtering Bioconductor Annotation resources HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Infrastructure, Software
Version 1.25.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports utils, methods, GenomicRanges, lazyeval
Linking To
Suggests BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db, rmarkdown
System Requirements
Enhances
URL https://github.com/Bioconductor/AnnotationFilter
Bug Reports https://github.com/Bioconductor/AnnotationFilter/issues
See More
Depends On Me chimeraviz, CompoundDb, ensembldb, Organism.dplyr
Imports Me biovizBase, BUSpaRse, drugTargetInteractions, GenomicDistributionsData, ggbio, proteasy, QFeatures, RITAN, scanMiRApp, TVTB
Suggests Me GenomicDistributions, GenomicFeatures, TFutils, wiggleplotr
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnnotationFilter_1.25.0.tar.gz
Windows Binary AnnotationFilter_1.25.0.zip
macOS Binary (x86_64) AnnotationFilter_1.25.0.tgz
macOS Binary (arm64) AnnotationFilter_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnnotationFilter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnnotationFilter
Bioc Package Browser https://code.bioconductor.org/browse/AnnotationFilter/
Package Short Url https://bioconductor.org/packages/AnnotationFilter/
Package Downloads Report Download Stats